|
Home
People
Research
Publications
Software
Positions
Contact
|
|
|
Software
Genome Browsers
UCSC Genome Browser
UCSC Archaeal Genome Browser
Comparative Genomics
PHAST package
(with
Adam Siepel)
DLESS: HMM-based detection of lineage-specific genomic elements
phyloP: Phylogenetic tests of lineage-specific selection with p-values
Metagenomics
MetaPASSAGE: A Metagenomic Pipeline for Automated
Simulations and Analysis of Gene Families
PhylOTU:
Phylogenetic clustering of metagenomic sequences into operational
taxonomic units (OTUs)
Statistical Programming
R and
Bioconductor Projects
multtest package (multiple hypothesis testing)
hopach package (clustering)
rphast package
(phylogenetic analysis with space/time models)(also on CRAN)
PAMSIL stand alone C program (clustering)
|