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Software
Genome Browsers
UCSC Genome Browser
UCSC Archaeal Genome Browser
Statistical Programming
R and
Bioconductor Projects
multtest package (multiple hypothesis testing)
hopach package (clustering)
Rphast package (phylogenetic analysis with space/time models)
Coming soon!
PAMSIL stand alone C program (clustering)
Comparative Genomics
DLESS (detection of lineage-specific selection)
available in the PHAST package developed by
Adam Siepel
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